Examples

Some examples for various models. The modeling details can be found in the article.

2D examples

Active Brownian Particles

Active Brownian Particles

Chemotaxis induced by deformations

Chemotaxis induced by deformations

Engulfment due to surface tension effects

Engulfment due to surface tension effects

Crowd evacuation

Crowd evacuation

Falling soft spheres in 2D

Falling soft spheres in 2D

Micropipette experiment

Micropipette experiment

Random protrusions

Random protrusions

Emergence of alignment in a system of active rod-shaped particles

Emergence of alignment in a system of active rod-shaped particles

Run-and-tumble in 2D with soft spheres in a disk domain

Run-and-tumble in 2D with soft spheres in a disk domain

Sorting due to surface tension effects

Sorting due to surface tension effects

Growth of a 2D cell aggregate

Growth of a 2D cell aggregate

3D examples

Benchmark: 3D Run-and-Tumble with deformations.

Benchmark: 3D Run-and-Tumble with deformations.

Bubbles

Bubbles

Cell sorting in 3D

Cell sorting in 3D

Falling soft spheres in a 3D hourglass domain

Falling soft spheres in a 3D hourglass domain

Run-and-tumble in 3D with soft spheres

Run-and-tumble in 3D with soft spheres

Growth of a 3D cell aggregate

Growth of a 3D cell aggregate