.. _sphx_glr__auto_examples_3D:

3D examples
---------------


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    <div class="sphx-glr-thumbnails">

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    <div class="sphx-glr-thumbcontainer" tooltip="As a benchmark, we consider a 3D system of self-propelled deformable ellipsoids in a strongly packed domain. Each particle moves in the direction of its principal axis which evolves according to a re-orientation process subject to the deformations caused by the surrounding particles.  We consider N particles in a 3D bounded box, discretized on a grid of size M^3.">

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  .. image:: /_auto_examples/3D/images/thumb/sphx_glr_Benchmark_3D_thumb.png
    :alt:

  :doc:`/_auto_examples/3D/Benchmark_3D`

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      <div class="sphx-glr-thumbnail-title">Benchmark: 3D Run-and-Tumble with deformations.</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="This is a non-scientific experiment with bubbles. ">

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  .. image:: /_auto_examples/3D/images/thumb/sphx_glr_Bubbles_thumb.png
    :alt:

  :doc:`/_auto_examples/3D/Bubbles`

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      <div class="sphx-glr-thumbnail-title">Bubbles</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="This script simulates 3D cell aggregates with the following weighted L^2 cost and force for the cell i">

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  .. image:: /_auto_examples/3D/images/thumb/sphx_glr_CellSorting3D_thumb.png
    :alt:

  :doc:`/_auto_examples/3D/CellSorting3D`

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      <div class="sphx-glr-thumbnail-title">Cell sorting in 3D</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Our framework can handle arbitrary domains by considering appropriately distributed source points. ">

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  .. image:: /_auto_examples/3D/images/thumb/sphx_glr_FallingStuff_thumb.png
    :alt:

  :doc:`/_auto_examples/3D/FallingStuff`

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      <div class="sphx-glr-thumbnail-title">Falling soft spheres in a 3D hourglass domain</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Run-and-tumble in 3D with soft spheres">

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  .. image:: /_auto_examples/3D/images/thumb/sphx_glr_RunTumble3D_thumb.png
    :alt:

  :doc:`/_auto_examples/3D/RunTumble3D`

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      <div class="sphx-glr-thumbnail-title">Run-and-tumble in 3D with soft spheres</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="We consider a 3D cell aggregate growing according to a basic somatic cell cycle. Starting from one cell, each cell grows at a linear speed until a target volume is reached, then it  divides after a random exponential time producing two daughter cells with identical half volumes.">

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  .. image:: /_auto_examples/3D/images/thumb/sphx_glr_TissueGrowth_3D_thumb.png
    :alt:

  :doc:`/_auto_examples/3D/TissueGrowth_3D`

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      <div class="sphx-glr-thumbnail-title">Growth of a 3D cell aggregate</div>
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    </div>


.. toctree::
   :hidden:

   /_auto_examples/3D/Benchmark_3D
   /_auto_examples/3D/Bubbles
   /_auto_examples/3D/CellSorting3D
   /_auto_examples/3D/FallingStuff
   /_auto_examples/3D/RunTumble3D
   /_auto_examples/3D/TissueGrowth_3D